![]() ![]() Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.Ĭollecting package metadata (repodata.json): doneįound conflicts! Looking for incompatible packages. Solving environment: failed with initial frozen solve. I've also tried with conda install -c bioconda bioconductor-spatiallibd (in a completely new virtual env) but end up with the following error: Collecting package metadata (current_repodata.json): done ![]() Loaded via a namespace (and not attached): stats graphics grDevices utils datasets methods base LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 ![]() LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 # please also include the results of running the following in an R sessionīLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 Installation of package ‘spatialLIBD’ had non-zero exit status Installation of package ‘SpatialExperiment’ had non-zero exit status Installation of package ‘magick’ had non-zero exit status Installation paths not writeable, unable to update packages * removing ‘/projects/kster/.conda/envs/r-spalibd/spatialLIBD’ * removing ‘/projects/kster/.conda/envs/r-spalibd/SpatialExperiment’ĮRROR: dependencies ‘SpatialExperiment’, ‘magick’ are not available for package ‘spatialLIBD’ * removing ‘/projects/kster/.conda/envs/r-spalibd/magick’ĮRROR: dependency ‘magick’ is not available for package ‘SpatialExperiment’ :1:10: fatal error: Magick++.h: No such file or directoryĮRROR: configuration failed for package ‘magick’ R CMD INSTALL -configure-vars='INCLUDE_DIR=. Is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: PATH and PKG_CONFIG_PATH contains a Magick++.pc file. If Magick++ is already installed, check that 'pkg-config' is in your Sudo add-apt-repository -y ppa:cran/imagemagick rpm: ImageMagick-c++-devel (Fedora, CentOS, RHEL)įor Ubuntu versions Trusty (14.04) and Xenial (16.04) use our PPA: Ĭonfiguration failed to find the Magick++ library. To the PKG_CONFIG_PATH environment variable Perhaps you should add the directory containing `Magick++.pc' Package Magick++ was not found in the pkg-config search path. ** package ‘magick’ successfully unpacked and MD5 sums checked 'getOption("repos")' replaces Bioconductor standard repositories, seeīioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 ()Īlso installing the dependencies ‘SpatialExperiment’, ‘magick’Ĭontent type 'application/x-gzip' length 5389608 bytes (5.1 MB)Ĭontent type 'application/x-gzip' length 4813163 bytes (4.6 MB)Ĭontent type 'application/x-gzip' length 7293576 bytes (7.0 MB) # include your problematic code here with any corresponding output is there a work around to installing spatialLIBD without having to this dependency? I am only interested in getting the datasets, not using the visualization functions. I don't have root access so cannot install Magick++. ![]() The problem seems to occur with the magick dependency. I seem to be having a problem downloading the R package spatialLIBD. ![]()
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